Gerrit Vriend: search on Z-Library

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1

"Jesus Is the Christ": The Political Theology of "Leviathan"

Gerrit Manenschijn and John Vriend

Journal:

Journal of Religious Ethics

Year:

1997

Language:

english

File:

PDF, 4.02 MB

english, 1997

2

A very fast program for visualizing protein surfaces, channels and cavities

Richard Voorintholt, M.T. Kosters, G. Vegter, Gerrit Vriend, W.G.J. Hol

Journal:

Journal of Molecular Graphics

Year:

1989

Language:

english

File:

PDF, 243 KB

english, 1989

3

Positioning hydrogen atoms by optimizing hydrogen-bond networks in protein structures

Hooft, Rob W.W., Sander, Chris, Vriend, Gerrit

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1996

Language:

english

File:

PDF, 1.28 MB

english, 1996

4

GCI: A network server for interactive 3D graphics

Georg Tuparev, Gerrit Vriend, Chris Sander

Journal:

Journal of Molecular Graphics

Year:

1992

Language:

english

File:

PDF, 615 KB

english, 1992

5

Analysis of the black-eyed pea trypsin and chymotrypsin inhibitor-α-chymotrypsin complex

Sonia M de Freitas, Luciane V de Mello, Maria Cristina M da Silva, Gerrit Vriend, Goran Neshich, Manuel M Ventura

Journal:

Year:

1997

Language:

english

File:

PDF, 818 KB

english, 1997

6

The effect of engineering surface loops on the thermal stability of Bacillus subtilis neutral protease

Hardy, Florence, Vriend, Gerrit, Vinne, Bernard van der, Frigerio, Francesco, Grandi, Guido, Venema, Gerard, Ejjsink, Vincent G.H.

Journal:

Protein Engineering Design and Selection

Year:

1994

Language:

english

File:

PDF, 599 KB

english, 1994

7

MetaDome: Pathogenicity analysis of genetic variants through aggregation of homologous human protein domains

Wiel, Laurens, Baakman, Coos, Gilissen, Daan, Veltman, Joris A., Vriend, Gerrit, Gilissen, Christian

Journal:

Year:

2019

Language:

english

File:

PDF, 386 KB

english, 2019

8

Protein design on computers. Five new proteins: Shpilka, grendel, fingerclasp, leather, and aida

Chris Sander, Gerrit Vriend, Fernando Bazan, Amnon Horovitz, Haruki Nakamura, Luis Ribas, Alexei V. Finkelstein, Andrew Lockhart, Rainer Merkl, L. Jeanne Perry, Stephen C. Emery, Christine Gaboriaud,

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1992

Language:

english

File:

PDF, 589 KB

english, 1992

9

The Use of in Vitro Peptide Binding Profiles and in Silico Ligand-Receptor Interaction Profiles to Describe Ligand-Induced Conformations of the Retinoid X Receptor α Ligand-Binding Domain

Folkertsma, Simon, van Noort, Paula I., de Heer, Arnold, Carati, Peter, Brandt, Ralph, Visser, Arie, Vriend, Gerrit, de Vlieg, Jacob

Journal:

Molecular Endocrinology

Year:

2007

Language:

english

File:

PDF, 1.74 MB

english, 2007

10

Improving the thermostability of the neutral protease of Bacillus stearothermophilus by replacing a buried asparagine by leucine

Vincent G.H. Eijsink, Rob van der Zee, Bertus van den Burg, Gerrit Vriend, Gerard Venema

Journal:

Year:

1991

Language:

english

File:

PDF, 544 KB

english, 1991

11

THE EFFECT OF HIGH DOSE STATINS ON VASCULAR WALL DAMAGE AND CARDIOVASCULAR RISK IN AORTIC COARCTATION

Luiiendiik, Paul, Bouma, Berto, Vriend, Joris, Vliegen, Hubert, Groenink, Maarten, Groot, Eric De, Pieper, Petronella, van Dijk, Arie, Sieswerda, Gert-Jan, Veen, Gerrit, Zwinderman, Aeilko, Mulder, Ba

Journal:

Journal of the American College of Cardiology

Year:

2013

Language:

english

File:

PDF, 146 KB

english, 2013

12

Gene-dosage dependent overexpression at the 13q amplicon identifies DIS3 as candidate oncogene in colorectal cancer progression

de Groen, Florence L.M., Krijgsman, Oscar, Tijssen, Marianne, Vriend, Lianne E.M., Ylstra, Bauke, Hooijberg, Erik, Meijer, Gerrit A., Steenbergen, Renske D.M., Carvalho, Beatriz

Journal:

Genes, Chromosomes and Cancer

Year:

2014

Language:

english

File:

PDF, 441 KB

english, 2014

13

Sedation: A guide to patient management

Luiiendiik, Paul, Bouma, Berto, Vriend, Joris, Vliegen, Hubert, Groenink, Maarten, Groot, Eric De, Pieper, Petronella, van Dijk, Arie, Sieswerda, Gert-Jan, Veen, Gerrit, Zwinderman, Aeilko, Mulder, Ba

Journal:

Journal of Oral and Maxillofacial Surgery

Year:

1989

Language:

english

File:

PDF, 139 KB

english, 1989

14

Structure-function relationship for the highly toxic crotoxin fromCrotalus durissus terrificus

Yvonne P. Mascarenhas, Pieter F.W. Stouten, José R. Beltran, Carlos J. Laure, Gerrit Vriend

Journal:

European Biophysics Journal

Year:

1992

Language:

english

File:

PDF, 593 KB

english, 1992

15

Objectively judging the quality of a protein structure from a Ramachandran plot

Hooft, Rob W.W., Sander, Chris, Vriend, Gerrit

Journal:

Year:

1997

Language:

english

File:

PDF, 1.92 MB

english, 1997

16

The Nuclear Receptor Ligand-Binding Domain: A Family-Based Structure Analysis

Folkertsma, Simon, Noort, Paula, Brandt, Ralph, Bettler, Emmanuel, Vriend, Gerrit, Vlieg, Jacob

Journal:

Current Medicinal Chemistry

Year:

2005

Language:

english

File:

PDF, 624 KB

english, 2005

17

Optimizing the hydrogen-bond network in Poisson–Boltzmann equation-based pKa calculations

Jens E. Nielsen, Gerrit Vriend

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2001

Language:

english

File:

PDF, 167 KB

english, 2001

18

Stabilization of the neutral protease of Bacillus stearothermophilus by removal of a buried water molecule

Vriend, Gerrit, Berendsen, Herman J.C., van der Zee, J. Rob, van der Burg, Bertus, Venema, Gerard, Eijsink, Vincent G.H.

Journal:

Protein Engineering Design and Selection

Year:

1991

Language:

english

File:

PDF, 465 KB

english, 1991

19

MetaDome: Pathogenicity analysis of genetic variants through aggregation of homologous human protein domains

Wiel, Laurens, Baakman, Coos, Gilissen, Daan, Veltman, Joris A., Vriend, Gerrit, Gilissen, Christian

Journal:

Year:

2019

File:

PDF, 386 KB

2019

20

Improved coordinate reconstruction from stereo diagrams

Rob W.W. Hooft, Gerrit Vriend

Journal:

Journal of Molecular Graphics

Year:

1996

Language:

english

File:

PDF, 444 KB

english, 1996

21

Failure of stop and go in de novo Parkinson's disease—a functional magnetic resonance imaging study

Vriend, Chris, Gerrits, Niels J.H.M., Berendse, Henk W., Veltman, Dick J., van den Heuvel, Odile A., van der Werf, Ysbrand D.

Journal:

Neurobiology of Aging

Year:

2015

Language:

english

File:

PDF, 531 KB

english, 2015

22

Aggregation of population-based genetic variation over protein domain homologues and its potential use in genetic diagnostics

Wiel, Laurens, Venselaar, Hanka, Veltman, Joris A., Vriend, Gerrit, Gilissen, Christian

Journal:

Year:

2017

Language:

english

File:

PDF, 1.61 MB

english, 2017

23

A sequence and structural study of transmembrane helices

Robert P. Bywater, David Thomas, Gerrit Vriend

Journal:

Journal of Computer-Aided Molecular Design

Year:

2001

Language:

english

File:

PDF, 318 KB

english, 2001

24

Prediction of Secondary Structura1 Elements in the Phosphatidylcholine–Transfer Protein from Bovine Liver

Robert AKEROYD, Johannes A. LENSTRA, Jan WESTERMAN, Gerrit VRIEND, Karel W. A. WIRTZ, Laurens L. M. VAN DEENEN

Journal:

Year:

1982

Language:

english

File:

PDF, 448 KB

english, 1982

25

Kinetic Analysis of the Interaction of the Phosphatidylcholine Exchange Protein with Unilamellar Vesicles and Multilamellar Liposomes

Karel W. A. WIRTZ, Gerrit VRIEND, Jan WESTERMAN

Journal:

Year:

1979

Language:

english

File:

PDF, 679 KB

english, 1979

26

Implications of the Picornavirus Capsid Structure for Polyprotein Processing

Edward Arnold, Ming Luo, Gerrit Vriend, Michael G. Rossmann, Ann C. Palmenberg, Griffith D. Parks, Martin J. H. Nicklin and Eckard Wimmer

Journal:

Proceedings of the National Academy of Sciences

Year:

1987

Language:

english

File:

PDF, 972 KB

english, 1987

27

Comparison of the three-dimensional structure of two human rhinoviruses (HRV2 and HRV14)

Dieter Blaas, Ernst Kuechier, Gerrit Vriend, Edward Arnold, Ming Luo, Michael G. Rossmann

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1987

Language:

english

File:

PDF, 2.27 MB

english, 1987

28

Sequence analysis reveals how G protein–coupled receptors transduce the signal to the G protein

Laerte Oliveira, Paulo B. Paiva, Antonio C. M. Paiva, Gerrit Vriend

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 983 KB

english, 2003

29

Conformational changes in the chaperonin GroEL: new insights into the allosteric mechanism

Bert L de Groot, Gerrit Vriend, Herman J.C Berendsen

Journal:

Journal of Molecular Biology

Year:

1999

Language:

english

File:

PDF, 322 KB

english, 1999

30

3D-e-Chem: Structural Cheminformatics Workflows for Computer-Aided Drug Discovery

Kooistra, Albert J, Vass, Marton, McGuire, Ross, Leurs, Rob, de Esch, Iwan JP, Vriend, Gerrit, Verhoeven, Stefan, de Graaf, Chris

Journal:

Year:

2018

Language:

english

File:

PDF, 3.30 MB

english, 2018

31

Identification of functionally conserved residues with the use of entropy–variability plots

Laerte Oliveira, Paulo B. Paiva, Antonio C.M. Paiva, Gerrit Vriend

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 548 KB

english, 2003

32

Detection of common three-dimensional substructures in proteins

Gerrit Vriend, Chris Sander

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1991

Language:

english

File:

PDF, 630 KB

english, 1991

33

Common cold viruses

Rossmann, Michael G., Arnold, Edward, Griffith, James P., Kamer, Greg, Luo, Ming, Smith, Thomas J., Vriend, Gerrit, Rueckert, Roland R., Sherry, Barbara, McKinlay, Mark A.

Journal:

Trends in Biochemical Sciences

Year:

1987

Language:

english

File:

PDF, 617 KB

english, 1987

34

Generic GPCR residue numbers – aligning topology maps while minding the gaps

Isberg, Vignir, de Graaf, Chris, Bortolato, Andrea, Cherezov, Vadim, Katritch, Vsevolod, Marshall, Fiona H., Mordalski, Stefan, Pin, Jean-Philippe, Stevens, Raymond C., Vriend, Gerrit, Gloriam, David

Journal:

Trends in Pharmacological Sciences

Year:

2015

Language:

english

File:

PDF, 2.88 MB

english, 2015

35

On the Specificity of Carboxypeptidase N, a Comparative Study

HENDRIKS, Dirk, VINGRON, Martin, VRIEND, Gerrit, WANG, Wei, NALIS, Dominique, SCHARPÉ, Simon

Journal:

Biological Chemistry Hoppe-Seyler

Year:

1993

Language:

english

File:

PDF, 1.67 MB

english, 1993

36

Effects of changing the interaction between subdomains on the thermostability of Bacillus neutral proteases

Vincent G. H. Eijsink, Gerrit Vriend, Bernard van der Vinne, Bart Hazes, Bertus van den Burg, Gerard Venema

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1992

Language:

english

File:

PDF, 1.15 MB

english, 1992

37

Introduction of a stabilizing 10 residue β-hairpin in Bacillus subtilis neutral protease

Eijsink, Vincent G.H., Vriend, Gerrit, van den Burg, Bertus, van der Zee, J.Rob, Veltman, Oene R., Stulp, Ben K., Venema, Gerard

Journal:

Protein Engineering Design and Selection

Year:

1992

Language:

english

File:

PDF, 3.71 MB

english, 1992

38

Increasing the thermostability of a neutral protease by replacing positively charged amino acids in the N-terminal turn of α-helices

Eijsink, G.H.Vincent, Vriend, Gerrit, van den Burg, Bertus, van der Zee, J.Rob, Venema, Gerard

Journal:

Protein Engineering Design and Selection

Year:

1992

Language:

english

File:

PDF, 487 KB

english, 1992

39

Relation between exercise-induced hypertension and sustained hypertension in adult patients after successful repair of aortic coarctation

Vriend, Joris WJ, Montfrans, Gert Avan, Romkes, Hans H, Vliegen, Hubert W, Veen, Gerrit, Tijssen, Jan GP, Mulder, Barbara JM

Journal:

Journal of Hypertension

Year:

2004

Language:

english

File:

PDF, 121 KB

english, 2004

40

Requirements and ontology for a G protein-coupled receptor oligomerization knowledge base

Lucy Skrabanek, Marta Murcia, Michel Bouvier, Lakshmi Devi, Susan R George, Martin J Lohse, Graeme Milligan, Richard Neubig, Krzysztof Palczewski, Marc Parmentier, Jean-Philippe Pin, Gerrit Vriend, Jo

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 1.21 MB

english, 2007

41

Crystal structure of the p-hydroxybenzoate hydroxylase-substrate complex refined at 1.9 Å resolution: Analysis of the enzyme-substrate and enzyme-product complexes

Herman A. Schreuder, Peter A.J. Prick, Rik K. Wierenga, Gerrit Vriend, Keith S. Wilson, Wim G.J. Hol, Jan Drenth

Journal:

Journal of Molecular Biology

Year:

1989

Language:

english

File:

PDF, 1.82 MB

english, 1989

42

Spatial Clustering of de Novo Missense Mutations Identifies Candidate Neurodevelopmental Disorder-Associated Genes

Lelieveld, Stefan H., Wiel, Laurens, Venselaar, Hanka, Pfundt, Rolph, Vriend, Gerrit, Veltman, Joris A., Brunner, Han G., Vissers, Lisenka E.L.M., Gilissen, Christian

Journal:

The American Journal of Human Genetics

Year:

2017

Language:

english

File:

PDF, 764 KB

english, 2017

43

Receptors coupling to G proteins: Is there a signal behind the sequence?

Florence Horn, Eleonora M. van der Wenden, Laerte Oliveira, Adriaan P. IJzerman, Gerrit Vriend

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2000

Language:

english

File:

PDF, 378 KB

english, 2000

44

A Family-based Approach Reveals the Function of Residues in the Nuclear Receptor Ligand-binding Domain

Simon Folkertsma, Paula van Noort, Joost Van Durme, Henk-Jan Joosten, Emmanuel Bettler, Wilco Fleuren, Laerte Oliveira, Florence Horn, Jacob de Vlieg, Gerrit Vriend

Journal:

Journal of Molecular Biology

Year:

2004

Language:

english

File:

PDF, 791 KB

english, 2004

45

The effect of cavity-filling mutations on the thermostability of Bacillus stearothermophilus neutral protease

Eijsink, Vincent G.H., Dijkstra, Bauke W., Vriend, Gerrit, van der Zee, J.Rob, Vettman, Oene R., van der Vinne, B., van den Burg, B., Kempe, S., Venema, G.

Journal:

Protein Engineering Design and Selection

Year:

1992

Language:

english

File:

PDF, 506 KB

english, 1992

46

Rubredoxin reductase of Pseudomonas oleovorans: Structural relationship to other flavoprotein oxidoreductases based on one NAD and two FAD fingerprints

Gerrit Eggink, Henk Engel, Gert Vriend, Peter Terpstra, Bernard Witholt

Journal:

Journal of Molecular Biology

Year:

1990

Language:

english

File:

PDF, 963 KB

english, 1990

47

Validation of nuclear magnetic resonance structures of proteins and nucleic acids: Hydrogen geometry and nomenclature

Jurgen F. Doreleijers, Gerrit Vriend, Mia L. Raves, Robert Kaptein

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1999

Language:

english

File:

PDF, 342 KB

english, 1999

48

G protein-coupled receptors in silico

Florence Horn, Gerrit Vriend

Journal:

Journal of Molecular Medicine

Year:

1998

Language:

english

File:

PDF, 453 KB

english, 1998

49

3D-e-Chem-VM: Structural Cheminformatics Research Infrastructure in a Freely Available Virtual Machine

McGuire, Ross, Verhoeven, Stefan, Vass, Márton, Vriend, Gerrit, de Esch, Iwan J. P., Lusher, Scott J., Leurs, Rob, Ridder, Lars, Kooistra, Albert J., Ritschel, Tina, de Graaf, Chris

Journal:

Journal of Chemical Information and Modeling

Year:

2017

Language:

english

File:

PDF, 2.12 MB

english, 2017

50

Residues in the TATA-binding protein required to mediate a transcriptional response to retinoic acid in EC cells

Keaveney, Marie, Berkenstam, Anders, Feigenbutz, Monika, Vriend, Gerrit, Stunnenberg, Hendrik G.

Journal:

Year:

1993

File:

PDF, 744 KB

1993

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— Carlos María Domínguez

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